---
name: cortex-server
description: >
  Everything needed to operate cortex.hydrascale.net — Michael's Ubuntu 24.04 VPS.
  Use this skill whenever the user asks to do ANYTHING on or related to: the cortex server,
  deploying or updating a website, pushing files live, adding a new domain, checking if a site
  is up, editing the Caddyfile, managing HTTPS certs, running server maintenance, checking or
  fixing rsync.net backups, installing packages, rebooting, or anything that needs to happen
  "on the server." Trigger on casual phrasing too — "push that to the site", "is the backup
  running?", "add another domain", "update the server", "what's running on cortex".
---

# Cortex Server — Operations Guide

## Quick Reference

| Item | Value |
|------|-------|
| Host | cortex.hydrascale.net |
| Public IP | 45.41.204.162 |
| SSH user | root |
| SSH port | 22 |
| OS | Ubuntu 24.04.2 LTS |
| Kernel | 6.8.0-101-generic |

---

## Connecting via SSH

Use **paramiko** — it's the only reliable SSH method in this environment (not the system `ssh` binary).

### Step 1 — Find the key file

Look for the `cortex` private key (RSA, passphrase-protected) in this order:
1. **Current session uploads** — `/sessions/*/mnt/uploads/cortex` (glob matches any session)
2. **Common local folders** — `~/Downloads/cortex` and `~/Desktop/cortex`
3. **Ask Michael** — If not found: *"Could you upload your `cortex` SSH key? It's the one at `~/.ssh/cortex` on your Mac."*

The key passphrase is: `42Awk!%@^#&`

Always copy to `/tmp` and lock permissions before use:
```bash
cp <found_key_path> /tmp/cortex_key && chmod 600 /tmp/cortex_key
```

**Dynamic lookup Python code:**
```python
import glob
import os

def find_cortex_key():
    """Find the cortex SSH key across multiple locations."""
    candidates = glob.glob('/sessions/*/mnt/uploads/cortex')
    candidates += [
        os.path.expanduser('~/Downloads/cortex'),
        os.path.expanduser('~/Desktop/cortex'),
    ]
    # Return the first one that exists
    return next((p for p in candidates if os.path.exists(p)), None)
```

### Step 2 — Install paramiko (if needed)
```bash
pip install paramiko --break-system-packages -q
```

### Step 3 — Standard connection boilerplate
```python
import paramiko
import glob
import os
import shutil

def find_cortex_key():
    """Find the cortex SSH key across multiple locations."""
    candidates = glob.glob('/sessions/*/mnt/uploads/cortex')
    candidates += [
        os.path.expanduser('~/Downloads/cortex'),
        os.path.expanduser('~/Desktop/cortex'),
    ]
    return next((p for p in candidates if os.path.exists(p)), None)

def connect_cortex():
    # Find the key
    key_found = find_cortex_key()
    if not key_found:
        raise FileNotFoundError('Could not find cortex SSH key. Upload ~/.ssh/cortex from your Mac.')

    # Copy to /tmp and lock permissions
    shutil.copy(key_found, '/tmp/cortex_key')
    os.chmod('/tmp/cortex_key', 0o600)

    # Connect via SSH
    key = paramiko.RSAKey.from_private_key_file('/tmp/cortex_key', password='42Awk!%@^#&')
    client = paramiko.SSHClient()
    client.set_missing_host_key_policy(paramiko.AutoAddPolicy())
    client.connect('cortex.hydrascale.net', port=22, username='root', pkey=key, timeout=15)
    return client

def run(client, cmd, timeout=60):
    stdin, stdout, stderr = client.exec_command(cmd, timeout=timeout)
    out = stdout.read().decode(errors='replace').strip()
    err = stderr.read().decode(errors='replace').strip()
    return out, err
```

### Uploading files via SFTP
```python
sftp = client.open_sftp()
with sftp.open('/remote/path/filename.html', 'wb') as f:
    with open('/local/path', 'rb') as local:
        f.write(local.read())
sftp.chmod('/remote/path/filename.html', 0o644)
sftp.close()
```

### Writing text config files to the server
```python
channel = client.get_transport().open_session()
channel.exec_command('cat > /path/to/config/file')
channel.sendall(content.encode())
channel.shutdown_write()
channel.recv_exit_status()
```

---

## Server Layout

```
/data/
└── sites/                        ← all websites live here
    ├── hydrascale.net/
    │   └── index.html            ← Shreveport crime map (static)
    └── <new-domain>/             ← add new sites here

/etc/caddy/Caddyfile              ← web server config (edit + reload to deploy)
/usr/local/bin/rsync_net_backup.sh ← nightly backup script
```

---

## What's Installed

| Service | Status | Notes |
|---------|--------|-------|
| Caddy v2.11.2 | ✅ running | Auto-HTTPS via Let's Encrypt |
| fail2ban | ✅ running | SSH brute-force protection |
| ufw | ✅ enabled | Ports 22, 80, 443 open |
| node_exporter | ✅ running | Prometheus metrics on localhost:9100 |
| Docker | ❌ not yet | Planned for dynamic/containerized sites |

---

## Deploying Websites

### Static site — new domain

1. Create directory: `mkdir -p /data/sites/<domain>`
2. Upload files via SFTP to `/data/sites/<domain>/`
3. Add a block to the Caddyfile (see below)
4. Validate + reload: `caddy validate --config /etc/caddy/Caddyfile && systemctl reload caddy`

### Updating an existing site

Just re-upload the files via SFTP — no Caddy reload needed for content-only changes.

### Caddyfile structure

The global `email` block must stay at the top. Each site gets its own block:

```
# Global options
{
    email mdwyer@michaelmdwyer.com
}

# Static site
example.com, www.example.com {
    root * /data/sites/example.com
    file_server
    encode gzip
    handle_errors {
        respond "{err.status_code} {err.status_text}" {err.status_code}
    }
}

# Docker reverse proxy (for future dynamic apps)
app.example.com {
    reverse_proxy localhost:8080
}
```

**When editing the Caddyfile**: read the current file first, append or modify the relevant block, write it back, then validate before reloading. Never reload without validating — a bad config will drop the site.

---

## Currently Live Sites

| Domain | Root | Content |
|--------|------|---------|
| hydrascale.net | /data/sites/hydrascale.net/ | Shreveport crime map |
| www.hydrascale.net | → same | Auto-redirects |

---

## rsync.net Backups

- **Account**: `de2613@de2613.rsync.net`
- **Auth key**: `/root/.ssh/rsync_net_key` on the server (the `hydrascale.net` RSA key — **no passphrase**)
- **Schedule**: Daily at 03:17 UTC (systemd timer)
- **What's backed up**: `/etc`, `/var/snap/lxd/common/lxd`, `/data`, `/data/sites`
- **Remote path**: `cortex-backup/cortex/` on rsync.net

### Backup key
The dedicated rsync.net key lives permanently at `/root/.ssh/rsync_net_key` on the server (this is the `hydrascale.net` key — RSA, no passphrase). The backup script passes it explicitly via `-e "ssh -i /root/.ssh/rsync_net_key"`. **Do not use `id_rsa` for rsync.net** — that key is not authorized there.

### Backup status check
Note: the journal will show failures before 2026-03-13 (auth was broken). To check current status, run a live connection test rather than relying solely on old journal entries:
```bash
# Check timer and last run
systemctl status rsync-net-backup.timer rsync-net-backup.service --no-pager
# Confirm auth still works (fast, non-destructive)
ssh -o BatchMode=yes -o IdentitiesOnly=yes -i /root/.ssh/rsync_net_key de2613@de2613.rsync.net ls 2>&1
```
Auth fixed 2026-03-13: `hydrascale.net` key installed at `/root/.ssh/rsync_net_key`, backup script updated to use it, rsync.net host key added to `known_hosts`.

### Trigger a manual backup run
```bash
systemctl start rsync-net-backup.service && journalctl -u rsync-net-backup.service -f --no-pager
```

### Connecting to rsync.net directly (from local VM, not via cortex)
```python
key = paramiko.RSAKey.from_private_key_file('/tmp/hydrascale_key')  # no passphrase
client.connect('de2613.rsync.net', port=22, username='de2613', pkey=key)
# Restricted shell — no output redirection, no pipes
# Supported commands: ls, du, df, mkdir, mv, rm, rsync, sftp, scp
```

### What's on rsync.net (legacy — from the old Red Hat server, ~2023)
- `cortex.hydrascale.net/hydramailer/` — Docker volume data (DB + Elasticsearch + Kibana) for the old Hydramailer consulting project — **recoverable if needed**
- `cortex.hydrascale.net/backup/` — MySQL dumps, vmail backups (hydrascale.net, trump.support, creativecampaignsolutions.com)
- `leviathan.hydrascale.net/` — PowerMTA configs from another old server
- `macbook-air/src/` — Source code (ChessCom, Dwyer-Solutions, Elm Guide, oura-ring, etc.) — last synced Feb 2024

---

## Common Operations

### Health check — verify everything is running
```python
for svc in ['caddy', 'fail2ban', 'ssh']:
    status, _ = run(client, f'systemctl is-active {svc}')
    print(f"{svc}: {status}")
```

### System updates (non-interactive, safe for production)
```bash
DEBIAN_FRONTEND=noninteractive apt-get upgrade -y \
  -o Dpkg::Options::="--force-confdef" \
  -o Dpkg::Options::="--force-confold" 2>&1 | tail -10
```

### Check if a reboot is needed
```bash
test -f /run/reboot-required && cat /run/reboot-required.pkgs || echo "No reboot needed"
```

### Reboot and wait for recovery

Issue the reboot, then poll until SSH responds again (usually ~75 seconds):
```python
try:
    client.exec_command('sleep 1 && reboot', timeout=5)
except: pass
client.close()

# Poll loop — reconnect when ready
import time, socket
while True:
    try:
        socket.create_connection(('cortex.hydrascale.net', 22), timeout=5).close()
        time.sleep(4)  # let sshd finish starting
        break
    except:
        time.sleep(6)
```

### View recent Caddy logs
```bash
journalctl -u caddy --no-pager -n 30
```

### Disk and memory at a glance
```bash
df -h / && free -h
```

---

## Symbiont Orchestrator (Elixir/OTP)

The `/data/symbiont_ex/` directory contains the **Symbiont** project — a self-sustaining AI agent orchestrator built in **Elixir/OTP**, running on the BEAM VM.

- **Runtime**: Elixir 1.19.5 / OTP 27
- **Project root**: `/data/symbiont_ex/`
- **Data**: `/data/symbiont_ex/data/` (ledger.jsonl, queue.jsonl)
- **Systemd service**: `symbiont-ex-api.service` — Plug + Bandit HTTP on port 8111
- **Python archive**: `/data/symbiont/` (retired, disabled — kept for reference)

Check status and logs:
```bash
systemctl status symbiont-ex-api.service --no-pager
journalctl -u symbiont-ex-api -f --no-pager
curl -s http://127.0.0.1:8111/health
curl -s http://127.0.0.1:8111/status | python3 -m json.tool
```